List of generic simulation software/tools/resource with brief description and homepage !!!
...s_software/hapgen/hapgen2.htmlHapSim A simulation tool for generating haplotype data with pre-specified allel...http://www2.unil.ch/popgen/softwares/quantinemo/RECOAL Simulates new haplotype data from a reference populat...3727 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...opulation; Fairly popular Input: Reference Haplotypes: Links to 1000 Genomes and H..., MNPs; reports variants based on alignment; haplotype based Input: BAM- uses BAMto...k, Pathway Association Analysis, Genome-wide Haplotype Analysis, Input: PLINK input...2899 days ago
Genome Assembly Tools and Software - PART1 !!
...e novo assemblies. HapCol 1.1.1 – Haplotype Assembly from Long Gapless Re...ds A fast and memory-efficient method for haplotype assembly from long gapless re...mbly using long reads. WhatsHap – Haplotype Assembly for Future-Generatio...2676 days ago
Frequent parameters for bioinformatics tools !
...tion) -nodownload -no-intron -no-downstream -no SPLICE_SITE_REGION -upDownStreamLen 250 bcftools consensus (phylogenetic tree) --haplotype 1 fasttreemp -nt -...1276 days ago