Results for "haplotype"

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  • Genome Assembly Tools and Software - PART2 !!

    ...cle-Basis Algorithm for Accurate Haplotype AssemblyHapCompass for p...COMPASS will assemble reads into haplotypes. GAM-NGS 1.1b – Genom...ndash; Short Reads Assembly into HaplotypesShoRAH is a software pac...and SOLiD. hapAssembly – Haplotype Assembly from Whole-Genome Se...

    2649 days ago

  • Bioinformatics in Africa: Part7 - Tunisia

    ...;signal  transduction pathways and statistical analysis of human sequence variation data (haplotype  reconstruction and...

    1146 days ago

Top-level pages

Wire posts

  • http://loupe.10xgenomics.com #10XGenomics #10X #Phase #Haplotype #View

    2018 days ago

  • Haplotype phasing: existing methods and new developments https://www.nature.com/articles/nrg3054 #phasing #tools

    1742 days ago

News

  • Phased Human Genome Assembly !

    ...;System. Using the FALCON-Unzip assembler, maternal and paternal haplotypes were resolved over more than 80% of the genome. Maternal and paternal haplotype blocks were then further phas...

    1999 days ago

Bio-Scripts

  • Bash script to simulate a genome !

    ...grep -v "^#"|wc -l # 2830139 # ~2% het rate # get only 1 haplotype from the "diploid" reference...bgzip -@75 \ > GCA_003401745.1_ASM340174v1_genomic.fna_upper.diploid.haplotype0.fasta.gz # make ref...

    881 days ago

Tags

  • Bioinformatics approach to Boar Taint

    Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex genetic trait called boar taint.Androstenone and Skatole in the fat primarily cause boar taint. Metabolism of androstenone and sex steroids share a common pathway which makes ...

    Tags: Sequencing, DNA, Whole genome re-sequencing, Boar taint, androstenone, skatole, pig, QTL, SNP, haplotype, fine mapping, SSC

    3752 days ago

  • HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies

    HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously described haplotype assembly methods are specialized for specific read technologies or protocols, with slow or inaccura...

    Tags: HapCUT2, robust, accurate, haplotype, assembly, diverse, sequencing, technologies

    2145 days ago

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