Results for "header"

Tags

  • To clean up a fasta file so only first column of the header is outputted:$ awk '{print $1}' file.fa > output.fa #Sed #Clean #Header #Fasta

    Tags: Sed, Clean, Header, Fasta

    2534 days ago

  • Perl onliner to add string to each of the fasta header. $ perl -p -e 's/^(>.*)$/$1-origin/g' in.fasta > out.fasta #String #Header #Fasta

    Tags: String, Header, Fasta

    1581 days ago

  • Remove the unnecessary #fasta #header. $ sed 's/\s.*$//' Adineta_vaga_v2.0.scaffolds.fa > new_file.fasta

    Tags: fasta, header

    2458 days ago

  • Remove unwanted character from fasta file. sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #fasta #file #header #charater

    Tags: fasta, file, header, charater

    2445 days ago

  • Remove "|" from fasta header. $ sed 's,|,_,g' -i file.fa #fasta #header #sed

    Tags: fasta, header, sed

    2445 days ago

  • How to remove a fasta sequence by header from a multifasta file ?

    >AAAAGTCGTGC >BBBAGTGCGGGTG Remove AAA and keep only BBB

    Tags: remove, delete, multifasta, fasta, header

    2333 days ago

  • Rename the fasta header perl -ane 'if(/\>/){$a++;print ">LR$a\n"}else{print;}' allPacBio_clean.fa > allPacBio_clean_shortName.fa #fasta #header #rename

    Tags: fasta, header, rename

    1974 days ago

  • Add number in fasta header $ awk '/^>/{$0=$0"_"(++i)}1' infile.fa #fasta #header #add #number #count

    Tags: fasta, header, add, number, count

    1926 days ago

  • One liner to remove the description information from a fasta file and just keep the identifier $ perl -p -i -e 's/>(.+?) .+/>$1/g' sample1.fa #clean #header #fasta

    Tags: clean, header, fasta

    1873 days ago

  • #Rename the #fasta #header and #keep first $ perl -ne 'if (/^(>\S+)/){print "$1\n";}else{print $_;}' realTestDATA.fa > realTestDATA_headerCorrected.fa #Perl

    Tags: Rename, fasta, header, keep, Perl

    1595 days ago