Results for "hidden markov model"

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  • Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation

    We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec...

    1108 days ago

  • Next Generation Sequencing (NGS) Tutorials

    Institute of computational biomedicine, Cornell University provide an NGS workshop tu...ch/training/training-activities-schedule/archive-2013.html Variant Detection (Model organism) Advanced tutorial h...

    3450 days ago

  • ChromEvol

    Chromosome number is a remarkably dynamic feature of eukar...ganism. ChromEvol implements a series of likelihood models for the evolution of chromosome numbers. By comparing the fit of the different models to biological data, it may b...

    3351 days ago

  • InfoGenomeR: Integrative reconstruction of cancer genome karyotypes

    InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomi...

    1059 days ago

  • Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences

    Smash is a completely alignment-free method/tool to find and visualise genomic rearr...ction is based on conditional exclusive compression, namely using a FCM (Markov model), of high context order (typi...

    2893 days ago

  • Machine Learning !!!

    In machine learning, computers apply statistical learning techniques to aut...crolling. Using a data set about homes, we will create a machine learning model to distinguish homes in New Y...

    2827 days ago

  • PHYMMBL

    Metagenomics sequencing projects collect samples of DNA from uncharacterized environ..., a new classification approach for metagenomics data which uses interpolated Markov models (IMMs) to taxonomically clas...

    2726 days ago

  • Beagle

    Beagle is a software package that performs genotype calling, genotype phasing, imputa...effect in version 4.1. If your data contains nuclear families and you want to model the parent-offspring relation...

    2709 days ago

  • ART: Set of Simulation Tools

    ART is a set of simulation tools to generate synthetic nex...icking real sequencing process with empirical error models or quality profiles summariz...T can also simulate reads using user own read error model or quality profiles. ART supp...

    2702 days ago

  • Many-Core Engine (MCE) for Perl example

    MCE spawns a pool of workers and the...d, MCE follows a bank queuing model. Imagine the line being the d...el workers. MCE enhances that model by adding the ability to chun...process while running. MCE MODELS The models take Many-Core E...l control when utilizing this model. MCE::Flow is similar to MCE:...

    2613 days ago