Results for "identify"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...served synteny in mind there have been various algorithms developed to identify the conserved homologous synt...(Synteny Mapping and Analysis Program) v4.0 is an automated system for identifying and displaying genome synt...2600 days ago
List of gene ontology software and tools
...ce) is a data-mining tool that can be used to identify significant co-clustering of...enrichment job for experimental biologists to identify enriched Gene Ontology (GO) t...xperiments. The main function of GOEAST is to identify significantly enriched GO ter...3699 days ago
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Bookmarks
RNA Sequencing Helps Identify Functional Variants from GWAS
For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out ho...3806 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...egments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype information to identify the optimal breakpoint graph...1086 days ago
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Pages
Linux SSH Client Commands for Bioinformatics
...for your SSH client is very sare, but sometimes it may be necessary to identify the SSH client that you are c...g “yes” to the message below, is to call your sysadmin and identify why you got the host key chan...3695 days ago
Top-level pages
Phylogenetic for Bioinformatics
...relationship tree" that shows the probable evolution of various organisms. Not until recent decades, however, has it been possible to isolate and identify these molecular structures.&n...3936 days ago
- ...parative Genomics Tutorial: GENOME TUTORIAL: Tools and resources for identifying protein families, domains...Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distin...
3932 days ago
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Wire posts
News
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
...structure, epigenetic gene regulation and chromosome fibre interactions to explore outstanding questions in the field and enable participants to identify new research opportunities an...3914 days ago
DNA Bending Propensity in the Presence of Base Mismatches: Implications for DNA Repair
...ir. Natural DNA repair occurs when proteins like MutS (the primary protein responsible for recognizing a variety of DNA mismatches) scan the DNA, identify a defect, and recruit other e...3901 days ago
- +13 more News
Opportunity posts
- ...th natural variation and the outcomes of experimental evolution will be correlated with phenotypes. The first challenge in the project will be to identify which of the many variants in...
3938 days ago
Postdoctoral Associate - Bioinformatics at Duke University Medical Center
...Postdoctoral Associate for a one year appointment to work on several high-dimensional research projects. The specific goals of the project are to identify genes or molecular markers th...3910 days ago
- +20 more Opportunity posts
ResearchLabs posts
The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
..., protein, tissue, chemicals and other substances. The genomics platform uses cancer genome sequencing and other high-throughput techniques to identify genes critical to the develop...3909 days ago
- ...l chemistry and computational biology with various "Omics" technologies including genomics and proteomics to understand signaling pathways and to identify therapeutic targets and bioma...
3869 days ago
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Video
Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.3879 days ago
- ...e polymorphisms when hybridized to restriction digests, or specific fragments, of an individual's DNA. The method was used in subsequent years to identify several human disease genes,...
3862 days ago
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Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...orizontalGeneCo-transferBacteriaAssociationsPopulationStructure github.com - GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (...1501 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --->...
1431 days ago
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Groups
Metagenomics is the study of genetic material from environmental samples to characterize and identify the millions of microbes from these samples. Example: Gut microbiome, soil sample...3693 days ago
Tags
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes including insertion/deletion and inversion could cause the degeneration of CHSs. Results Here we present a Java software CHSMiner tha...Tags: CHSMiner, GUI, tool, identify, chromosomal, homologous, segments
2349 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the post-assembly detection of contaminating sequences in ...Tags: Taxoblast, pipeline, identify, contamination, genomic, sequence
2344 days ago
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Comments
Comment on "Tools for Differential expression analysis"
...Differential expression analysis is a widely used technique in genomics and transcriptomics research that allows researchers to identify genes that are differentially...410 days ago
Comment on "Tools for RNA classification"
...classification that uses a covariance model approach to identify RNA homologs. It is particularly useful for identifying non-coding RNA (ncRNA) seq...to classify RNA sequences. It is particularly useful for identifying small functional RNA molec...410 days ago
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