Results for "identify"
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Comment on "Tools for Differential expression analysis"
...Differential expression analysis is a widely used technique in genomics and transcriptomics research that allows researchers to identify genes that are differentially...410 days ago
Comment on "Tools for RNA classification"
...classification that uses a covariance model approach to identify RNA homologs. It is particularly useful for identifying non-coding RNA (ncRNA) seq...to classify RNA sequences. It is particularly useful for identifying small functional RNA molec...410 days ago
Comment on "Basic command-line to run BLAST"
...the most similar matches. This is useful for identifying the function of a newly di...the database. It then expands the matches to identify longer regions of similarity,...rs make many important discoveries, including identifying new genes and understandin...410 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...uch as NCBI or Ensembl. Gene annotation: Annotate the genes in each genome using gene prediction software or tools such as MAKER. Identify orthologous genes: Identify the orthologous genes between...412 days ago
Comment on "Estimate Genome Size"
...s_0 > fastq.counts_0.histo # generate a pdf graph of the histogram jellyplot.pl fastq.counts_0.histo # look at fastq.counts_0.histo.pdf and identify the approximate peak # use f...1887 days ago
- ...tools for next generation sequencing (NGS) data, consisting of both raw reads quality evaluation and de novo contamination screening, which could identify all possible contamination se...
2126 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
...performed a comprehensive and comparative study using 10 newly sequenced transcriptomes, as well as three publically available transcriptomes, to identify the origins, expansions and c...2723 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3637 days ago
- There are several useful feature that make a differences. Python code is easy to use for beginners due to its intuitive design. Python is unlike other programming languages in that it uses indentation to identify blocks of code. Perl is a much older language with a wider range of modules available.
3659 days ago
Comment on "R and Bioconductor Tutorial"
...es [1] Biostrings – Reading sequences in R [2] BSGenomes – Reading in complete genomes and BioC annotation data [3] DEGSeq – Identify differentially expressed gene...3659 days ago
