3851 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before an...ike SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with tho...1209 days ago
3643 days ago
3505 days ago
International Conference on Bioinformatics Models, Methods and Algorithms
The purpose of the International Conference on Bioinformatics Models, Methods and Algorithms is to bring together...reas of interest for this community include sequence analysis, biostatistics, image anal...3490 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale....1086 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is b...igh context order (typically 20). For visualisation, Smash outputs a SVG image, wit...2921 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta...ical parameters (mutation bias along triplets, transition/transversion) post-processing step to group gapped alignmen...2915 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes...nes, non-coding genes, or neutral sequences. Satsuma does not require any pre-processing, such as repeat masking, sinc...2904 days ago
RCircos: an R package for Circos 2D track plots
...2D track plots with R and could be easily integrated into other R data processing and graphic manipulation...arch data. It can also serve as a base tool to generate complex Circos images. More at https://bitbucket.org/h...2897 days ago