Useful Publications and Websites for Deep Sequencing Data Analysis
...(6):e21400, 2011. PubMedCentral Artemis: an integrated platform for visualization an...82, 2011. Full Text, Home Page Rainbow: an integrated tool for efficient clustering...rowser is on the FAQ list A manual for the Integrated Genome Browser visualization...3769 days ago
List of bioinformatics open source projects/software.
...roprietary Vector NTI, a tool to analyze and edit DNA sequence files Integrated Genome Browser http://bioviz...gene transfer detection, Reticulograms, Substitution models) UGENE integrated bioinformatics tools Visomic...3746 days ago
List of In-silico Binding Site Prediction Tools
...e a novel method FunFOLD, which uses an automatic approach for cluster identification and residue selection. The software provided can easily be integrated into existing fold recognitio...3733 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and...producible genomics. A job webportal. Genomatix - Integrated Solutions for Next Generation...Open source, creates viewable output (with Affy's Integrated Genome Browser), and produces...3508 days ago
Apps for Busy Bioinformatics Researchers !!!
...ation for NCBI, Ensembl, RefSeq and UniProt. SimGene also contains an integrated genome browser with informati...mation for NCBI, Ensembl, RefSeq and UniProt. SimGene alsocontains an integrated genome browser with informati...3531 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sa...laxy = interactive and reproducible genomics. A job webportal. * Genomatix - Integrated Solutions for Next Generation...3232 days ago
Comprehensive list of visualization tools for biological pathways
...th Mapping and visualizing microarray gene-expression data and integrated biological pathway resources using SVG http://tinyurl.com/ArrayXPath/ GEPAT Integrated analysis of transcriptome dat...2276 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...s Cake Description: standalone program, “pipeline for the integrated analysis of somatic variants...ully probabilisticallys instead of using ad-hoc modeling; effects are integrated at the atomic level and stand...2898 days ago
Genome Assembly Tools and Software - PART1 !!
...– Different runs of a de novo assembler– Assemblies of different data types– Comparative assemblies InteMAP 1.0 – Integrated Metagenomic Assembly pipeline...2675 days ago
List of visualization tools for network biology
...ation http://www.biolayout.org/ BiologicalNetworks Efficient integrated multi-level analysis of micro...nd visualization http://Pathview.r-forge.r-project.org/ PINA Integrated platform for protein interact...2277 days ago