2481 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). I...2458 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...al realistic data and compared its performance with similar existing software and data source. Conclusion CHSMiner is characterized by its integrated workflow, fast speed and conv...2349 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...equences (query vs. reference), Reduces the processing time of sequences comparisons while providing highest quality results, Contains a fully integrated data filtering engine capable...2337 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE...2297 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...P-X is a microbial comparative genomic analysis platform with graphic interface. Serials of algorithms and methodologies have been developed and integrated to analyze and visualize geno...2284 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
...to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbial datasets. In real-time mode, it can be integrated with simple structural analys...2145 days ago
CGView - Circular Genome Viewer
...genome browsing, and facilitating data sharing. The feature labels in maps can be hyperlinked to external resources, allowing CGView maps to be integrated with existing web site conten...2136 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
...eline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringen...2089 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...cies dynamically generated in GALA can be viewed in Mulan, and conserved transcription factor binding sites identified with Mulan/multiTF can be integrated and overlaid with extensive g...2071 days ago