Harvest: a suite of core-genome alignment and visualization tools
...ding variant calls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive visualization of alignments,...2330 days ago
TeachEnG: Teaching Engine for Genomics
...for Genomics, provides educational games to help students and researchers understand key bioinformatics concepts. The current version includes interactive modules for sequence alignmen...2325 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...genome. It then generates a physical 3D model which represents the plausible consensus 3D structure of the genome. Deltafeatures a highly interactive visualization tool which enha...2318 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...ty metrics (both on assembly level and on the level of individual assembly points) constructs a merged combined scaffold assembly provides an interactive framework for a visual compar...2310 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data...2297 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome a...bles Dot to read in more alignments in certain regions on demand. Dot, an interactive viewer for genome-genome comp...2293 days ago
2288 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic t...2278 days ago
circosJS: d3 library to build circular graphs
Circos is a javascript library to easily build interactive graphs in a circular layout. It's based on d3.js. It aims to be a javascript version of the Circos software. You should consider using Circos to show: relationships between entities periodical data2263 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2248 days ago