Results for "iterative"
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A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...om a de novo assembly against a closely related reference. IMAGE, an iterative approach for closing gaps in...ORN, that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the curren...2540 days ago
- ...ed-memory multi-threading, point-to-point message passing, and remote direct memory access. The assembly and scaffolding were performed using an iterative overlap graph approach.
2481 days ago
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Bio++ : C Language libraries for your biological need
...format.Distance methods: (U/W)PGMA, NJ, BioNJ.Maximum likelihood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree reconstruction (iterative approaches).Tree consensus me...3938 days ago
Genome Assembly Tools and Software - PART2 !!
...h adapts to available computing resources by iteratively decomposing the assembly pr...novo Genome AssemblerPRICE (Paired-Read Iterative Contig Extension) is a de nov...quencing Depth IDBA is a practical iterative De Bruijn Graph De Novo Assem...2676 days ago
Top-level pages
- ...implemeted according to different basical principles. Recursive or iterative A recursive algorithm is o...dition matches. It is a method common to functional programming. Iterative algorithms use repetitive con...
3936 days ago
Commercial and public next-gen-seq (NGS) software
...Developed at the Sanger Centre by Zemin Ning, Anthony Cox and James Mullikin. C++ for Linux/Alpha. SOCS - Aligns SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp s...3509 days ago
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proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (http://dx.doi.org/10.1093/bioinformatics/btu392) is easy to install/run/configure supports various types of dat HiSeq/...Tags: proovread, large-scale, high-accuracy, PacBio, correction, iterative, read, consensus
2302 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipeline described in Hahn et al. 2013. The full article can be found here. Kindly cite the article if you are using MITObim in your work. The pipeline was originally developed for Illumina data, but thanks to the versat...Tags: MITObim, mitochondrial, baiting, iterative, mapping, Tools
2179 days ago
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Comment on "Short-read assembly using Spades !"
...by comparing it to reference genomes or sets of conserved genes. Iterative assembly: If the quality of the initial assembly is not satisfactory, SPAdes allows for an iterative assembly approach where the o...405 days ago
