Results for "k-mer"
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...omprehensive, and integrates read quality, mate pair orientation and insert length (for paired-end reads), sequencing coverage, read alignment and k-mer frequency. ALE pinpoints synt...2921 days ago
- ...lanation of the parameters. For more information, refer to the manual. KmerGenie can be used to determine the best k-mer size, minimum abundance of correct k-mers, and genome size estimation...
2695 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version...2572 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...s. Incorporating fosmid ends recovers entire chromosomes. Meraculous relies on an efficient and conservative traversal of the subgraph of the k-mer (deBruijn) graph of oligonucl...2361 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair...2332 days ago
Musket: a multistage k-mer spectrum based corrector
...ell-established leading next-generation sequencing read error correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introdu...2332 days ago
- ...does not compute the alignments explicitly, but rather estimates a k-mer based Jaccard similarity...equence identity using the Mash distance. An appropriate k-mer sampling rate is automaticall...
2326 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy o...2317 days ago
- Tallymer is based on enhanced suffix arrays. This gives a much larger flexibility concerning the choice of the k-mer size. Tallymer can process large data sizes of several billi...
2261 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate ma...ng the position of breakpoints stemming from structural variations. The k-mer search helps to detect and sp...2192 days ago
