Results for "kraken"

Bio-Scripts

  • Install kraken on linux

    ...added / updated specs: - kraken The following packages w...3.1 MB bioconda kraken-1.1 | h...ellyfish-1.1.12-h6bb024c_1 kraken bioconda/linux-64...------|----------------- kraken-0.10.6_eaf8fb68 |...

    1424 days ago

  • Download minikraken database !

    ...ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz % Total...M (JitMetaENV) ➜ day3 ls minikraken2_v2_8GB_201904.tgz (JitMetaE...tMetaENV) ➜ krakenDB mv ../minikraken2_v2_8GB_201904.tgz . (JitMet...ed.unmapped.R2.fastq.gz > evol1.kraken

    1176 days ago

  • Extract fasta header with ids !

    #Extract all the fasta header name with certain ids kraken --db ../../../../DATABASE/minikraken_20171019_8GB.tgz out.fa more out.fa_class.txt | grep "227859" | awk '{print $2}' > all_real_ids.txt...

    839 days ago