Results for "kraken"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
...67 (2012). KMC: Disk-based k-mer counting on a PC. Deorowicz, S., Debudaj-Grabysz, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Kraken: ultrafast metagenomic sequen...1037 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) S...867 days ago
Bookmarks
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for ass...metagenomic data. Using exact alignment of k-mers, Kraken achieves classification accur...to the fastest BLAST program. In its fastest mode, Kraken classifies 100 base pair read...2859 days ago
Metagenomics assembly workshop !!
...sembly Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binning MaxBin Binning MetaBAT Binning Classification Kraken Taxonomic Sequence Classifica...2565 days ago
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Top-level pages
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ty-reduction technique) Software (C++) https://github.com/marbl/mash Kraken Taxonomic assignment in meta...hensive sequence database Software (C++) https://ccb.jhu.edu/software/kraken/ LMAT Assignment of taxonom...2361 days ago
Wire posts
Bio-Scripts
- ...added / updated specs: - kraken The following packages w...3.1 MB bioconda kraken-1.1 | h...ellyfish-1.1.12-h6bb024c_1 kraken bioconda/linux-64...------|----------------- kraken-0.10.6_eaf8fb68 |...
1453 days ago
Download minikraken database !
...ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz % Total...M (JitMetaENV) ➜ day3 ls minikraken2_v2_8GB_201904.tgz (JitMetaE...tMetaENV) ➜ krakenDB mv ../minikraken2_v2_8GB_201904.tgz . (JitMet...ed.unmapped.R2.fastq.gz > evol1.kraken1205 days ago
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Tags
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and computationally expensive, forcing researchers to use faster abundance estimation programs, which only classify sm...Tags: Bioinformatics, Kraken, Metagenomic, Sequence, Classification, Alignments, NGS
2859 days ago
kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomicsTags: kraken, universal, genomic, coordinate, translator, comparative, genomics
2331 days ago
Comments
- ...one application or it can be integrated into a larger pipeline solution. fastqp fastqp. Simple FASTQ quality assessment using Python. Kraken kraken:A set of tools for quality co...
2128 days ago
