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Results for "linux"

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  • Radha Agarkar

    Is Linux OS necessary for Bioinformatics? If yes which one is the best for NGS analysis.

    I am currently working on NGS, and looking for a nice OS to handle huge amount of genomics data with an ease. Someone suggested me that Window OS will be a bad idea to use for NGS analysis. I need your valuable suggestion for the best. Thanks

    Tags: NGS, OS, Linux, Window, Best

    3613 days ago

  • Rahul Nayak

    Search Shell Command History

    We use couple of hundreads of command in daily basis. Most of them are actually repeated several time. The question remain open how do I search old command history under bash shell and modify or reuse it? Now a days almost all modern shell allows you to search command history if enabled by user. ...

    Tags: Bioinformatics, Computational Biology, Linux, History, Search, Find, Delete, Shell, Command

    3604 days ago

  • Jit

    Count the number of "pattern" occurrence in a file grep -o 'pattern' anc.annots.gff | wc -l #Linux #grep #Count #Number #Occurrence

    Tags: Linux, grep, Count, Number, Occurrence

    3606 days ago

  • Abhimanyu Singh

    Linux one-liner. https://wikis.utexas.edu/display/bioiteam/Scott%27s+list+of+linux+one-liners #Linux #Oneliner #NGS

    Tags: Linux, Oneliner, NGS

    3575 days ago

  • Jit

    To count number of fasta entries, I use: grep -c '^>' mySequences.fasta #Perl #Count #Number #Fasta #Linux #Grep

    Tags: Perl, Count, Number, Fasta, Linux, Grep

    3566 days ago

  • Jit

    The syntax to remove last character from line or word is as follows: x="foo bar" echo "${x%?}" #Remove #Last #Bash #Linux

    Tags: Remove, Last, Bash, Linux

    3541 days ago

  • Jitendra Narayan

    replace a word in all files in a directory: grep -lr --exclude-dir=".git" -e "oldword" . | xargs sed -i "s/oldword/newword/g" #Replace #Word #Linux

    Tags: Replace, Word, Linux

    3522 days ago

  • Rahul Nayak

    Print the PYTHONPATH python -c "import sys; print sys.path" #Pythonpath #Linux

    Tags: Pythonpath, Linux

    3449 days ago

  • Rahul Nayak

    VirtualBox share folder http://helpdeskgeek.com/virtualization/virtualbox-share-folder-host-guest/ #VirtualBox #Linux #Share #Folder #Help

    Tags: VirtualBox, Linux, Share, Folder, Help

    3361 days ago

  • Ravindra Raut

    Ravindra Raut

    A Computational biologist, currently investigating the impact of transposable elements on the adaptation of the rice genome under fungal pathogen challenges and genome duplication. Experienced in using next-generation sequencing technologies like shotgun sequencing, linked reads, and long-read se...

    Skills: Programming (Python, Linux, Bash, R), Computational Biology, NGS technologies, WGS, RNA Seq, Repeats, Variant Calling

    1130 days ago

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