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  • Download blasr 1.3 version

    ...-n 1 all_p_ctg.fa read.sai - | grep '\(^@\|XT:A:U\)' | /usr/local/bin/samtools view -S -h -b -F 0x4 - | /usr/local/bin/samtools sort -@ 20 -no -...eat.pl FALCON-Unzip-Scaff-with-repeat.bam repeat.dat | /usr/local/bin/samtools view - -h -S -b...

    2114 days ago

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  • NCBI PSI-BLAST Tutorial

    http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.

    3871 days ago

  • Computer Theory & Genetics: George Chao at TEDxUMNSalon

    ...xUMN.com/ In the spirit of ideas worth spreading, TEDx is a program of local, self-organized events that b...combine to spark deep discussion and connection in a small group. These local, self-organized events are br...

    3878 days ago

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  • Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation

    We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while ...

    Tags: Nucl2Vec, Local, alignment, DNA, sequences, Distributed, Vector, Representation

    1109 days ago

  • #Local #BLAST tutorial http://www.woolfit.net/perl/51blastall.html

    Tags: Local, BLAST

    3043 days ago

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