How to install Perl modules manually, using CPAN command, and other quick ways
.../5.10.0/i386-linux-thread-multi/usr/lib/perl5/5.10.0/usr/local/lib/perl5/site_perl/5.10.0/i386-linux-thread-multi/usr/local/lib/perl5/site_perl/5.10.0/us.../5.10.0/i386-linux-thread-multi/usr/lib/perl5/5.10.0/usr/local/lib/perl5/site_perl/5.10.0/i3...3913 days ago
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found t...1109 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this p...the alignment.With our new approach we have reduced computation cost forlocal alignment , while achieving a...1109 days ago
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A guide for complete R beginners :- Installing R packages
...ust install, however: if you are using Linux and don’t have root access, this command won’t work. you will be asked to select your local mirror, i.e. which server sho...3320 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...AD-seq for de novo assembly and marker design without available reference. Willing et al., Bioinformatics 27(16):2187-93, 2011. Publisher Website Local de novo assembly of RAD paire...3742 days ago
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Update Genome Workbench 2.7.15 released
...ic data, and retrieve BLAST results. Genome Workbench is built on the NCBI C++ ToolKit and uses cross-platform APIs for graphics. It runs on your local machine, and is available for...3683 days ago
Bioinformatics PhD studentship available in New Zealand
...plicants must have a BSc(Hons) or MSc degree in a relevant discipline and a willingness to learn and apply new techniques and work in a team. Both local and international students ar...3910 days ago
20th International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME)
...Telephone: +1-868-6452640 ext. 5009, +1-868-6848803 Fax: +1-868-6621873 E-mail: veme2015@sta.uwi.edu Deadline for receipt of applications by local organiser: 15 March 2015 CAL...3364 days ago
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Computer Theory & Genetics: George Chao at TEDxUMNSalon
...xUMN.com/ In the spirit of ideas worth spreading, TEDx is a program of local, self-organized events that b...combine to spark deep discussion and connection in a small group. These local, self-organized events are br...3878 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->ne...2878 days ago
2878 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while ...Tags: Nucl2Vec, Local, alignment, DNA, sequences, Distributed, Vector, Representation
1109 days ago
Comment on "Basic command-line to run BLAST"
...earch. BLAST (Basic Local Alignment Search Tool) is a w...into the BLAST website or saved as a file for local searches. Choose the dat...be done online using the NCBI BLAST website or locally using the command-line inte...386 days ago
Comment on "Sibelia: A comparative genomics tool"
...tions close to their borders, they will be truncated. In case of two genomes, some synteny blocks (of multiplicity two) could be corrected using local alinment algorithms. Use flag...1247 days ago