maftools - An R package to summarize, analyze and visualize MAF files....or any in-house studies as long as the data is in MAF format. Maftools can also handle ICGC Simple Somatic Mutation format.
maftools is on bioRxiv
Please cite...
maftools - An R package to summarize, analyze and visualize MAF files. Introduction.
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project has seqenced over 30 different cancers with sample...