Results for "mapper"
Blogs
Bioinformatics tools developed for Oxford Nanopore data analysis !
...graph. List of analysis tools developed for Oxford Nanopore data BWA Fast nanopore data tuned alignment tool https://github.com/lh3/bwa GraphMapMapper for long and error-prone read...2304 days ago
Useful Bioinformatics Analysis Tools !
...nbsp; Deorowicz, S., Danek, A., GTShark: Genotype compression in large projects, biorxiv.org, 2020; (): Whisper Experimental mapper of whole genome sequencing da...847 days ago
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Bookmarks
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.I...sents a significant improvement over the state-of-the-art for PacBio read mappers. GraphMap was also designed...3209 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (aka Sanger seq...
2935 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...AlgorithmsScarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Oth...2670 days ago
Awesome perl frameworks, libraries and software - PART 4
...ng Extopus as its frontend nekokak/p5-Teng - simple DBI wrapper/ORMapper faiproject/fai - non-in...l for cmu-sphinx yappo/p5-Data-Model - Data::Model is Data/Object Mapper and Model Manager. xaicron/p...2478 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...s are Guy St C Slater and Ewan Birney from EMBL. C for POSIX. GenomeMapper - GenomeMapper is a short read mapping tool...g at Stanford University. TopHat - TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns...3503 days ago
Software packages for next gen sequence analysis
...are Guy St C Slater and Ewan Birney from EMBL. C for POSIX. * GenomeMapper - GenomeMapper is a short read mapping tool...at Stanford University. * TopHat - TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns...3227 days ago
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Wire posts
Bio-Scripts
Long reads mapper bash script !
...h #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa reads.fa/f...less arguments provided" echo "#USAGE: runMapper.sh minimap2 ref.fa reads.fa/f...d -o $fileName.out.sam else echo "Unknown mapper name and parameter !" fi...2107 days ago
Tags
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.htmlFeatures Mapping position agnostic to alignment parameters. Consistently very high sensitivity and precision ...Tags: GraphMap, sensitive, accurate, mapper, long, error-prone, reads
2508 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware...Tags: NGMLR, long-read, mapper, designed, align, PacBio, Oxford, Nanopore
2186 days ago
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Comments
Comment on "LAMSA: fast split read alignment with long approximate matches"
...aximum allowed length of unaligned read part to trigger a bwt-based query. [300] -k --bwt-kmer [INT] Length of BWT-seed. [19] -f --fastest Use GEM-mapper's fastest mode(--fast-mapping...2107 days ago
- ➜ mashmap-Linux64-v2.0 git:(master) ✗ ./mashmap -h-----------------Mashmap is an approximate long read or contig mapper based on Jaccardsimilarity-----------------Example usage:$ mash...
2107 days ago
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