Results for "mapping"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ki/index.php/SynMap), SyMAP (http://www.symapdb.org/) SyMAP (Synteny Mapping and Analysis Program) v4.0 is...some formulas, a suitable image of syntenic relationships or physical mapping can be obtained. http://www.a...2600 days ago
Structural variation: the hidden genomic treasure
...us methods of detection in next generation sequencing data (paired end mapping, split reads, and depth of co...ls CNVnatora tool for CNV discovery and genotyping from depth of read mapping.2011a,2011b AGEa tools that...2692 days ago
BBTools for bioinformatician !
...I, D). Exact matches when mapping small reads (e.g. miRNA) W...r-thread basis, which affects mapping; and which reads are assigned...e I developed it to benchmark mapping algorithms, it is specificall...lt BBSplit uses fairly strict mapping parameters; you can get the s...2260 days ago
chromoMap-An R package for Interactive visualization and mapping of human chromosomes
...uces a special plot viz. the "chromosome heatmap" that, in addition to mapping elements, can visualize the d...fic for that location. You can map thousands of genes and can view all mappings easily. Users can investigat...2130 days ago
List of motif discovery tools !
...o the most highly conserved regions of proteins. CASTp -- computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated res...1983 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping, but may not include d...1827 days ago
Useful Bioinformatics Analysis Tools !
...p;Deorowicz, S., Gudys, A., Whisper 2: indel-sensitive short read mapping, bioRxiv.org, 2019;...s, A., Grabowski, Sz., Whisper: read sorting allows robust robust mapping of DNA sequencing data, ...853 days ago
List of comparative genomics resources !
...aryotic genomes Search for annotated genetic information of expressed sequence tags (ESTs) in different eukaryotic organisms. UniGene Find mapping and expression information fo...667 days ago
Common steps for reads mapping !
...e general steps to follow for mapping reads to a genome: Choos...the reference genome: Before mapping reads, the reference genome n...be filtered or trimmed before mapping. Run the mapper: The map...lling variants. Overall, mapping reads to a reference genome i...413 days ago
Steps to find palindrome in genomes !
...High-throughput sequencing technologies, such as PacBio and Oxford Nanopore, can generate long reads that can span entire palindromic regions. By mapping these reads to the genome, pa...413 days ago
