Tools to detect synteny blocks regions among multiple genomes
...ki/index.php/SynMap), SyMAP (http://www.symapdb.org/) SyMAP (Synteny Mapping and Analysis Program) v4.0 is...some formulas, a suitable image of syntenic relationships or physical mapping can be obtained. http://www.a...2595 days ago
Structural variation: the hidden genomic treasure
...us methods of detection in next generation sequencing data (paired end mapping, split reads, and depth of co...ls CNVnatora tool for CNV discovery and genotyping from depth of read mapping.2011a,2011b AGEa tools that...2688 days ago
Next Generation Sequencing (NGS) Tutorials
...8/2/284?etoc RseqFlow: Workflows for RNA-Seq data analysis DOI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Ge...3472 days ago
Latest paper on comparison of mapping tools
...D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14...http://bioinformatics.oxfordjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://re...3882 days ago
Bioinformatics approach to Boar Taint
...ple population for validation and then used for constructing SNPs haplotypes in close linkage disequilibrium with QTLs and fine mapping of QTLs through association mapping of genotyped SNPs. &nb...3774 days ago
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Bio++ : C Language libraries for your biological need
...ular evolution tools Parameter estimation under maximum likelihood.Ancestral states reconstructions: Marginal likelihood.(Weighted) substitution mapping.Sequences simulation under an...3933 days ago
Genome Assembly Tools and Software - PART2 !!
...s. RMAP 2.1 – Short-read MappingRMAP is aimed to map accu...reads or bisulfite-treated reads mapping. There is no limitaions on re...ge contains programs that support mapping of reads to a reference genom...t. IMAGE 2.4.1 – Iterative Mapping and Assembly for Gap Eliminat...2671 days ago
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Bioinformatics Courses Around the World
...matiikka/mbi/ DEGREE: Ph.D program in computational biology, bioinformatics, and biometryhttp://www.cs.helsinki.fi/combi/ Human Genome Mapping Project Resource Centre ...3928 days ago
3867 days ago
Scientists map 17,294 proteins produced in human body
...ss spectrometry-based analysis of human tissues, body fluids and cells mapping the large majority of the hum...was sequenced around the turn of the millennium, this is an equivalent mapping of the human proteome.The res...3614 days ago
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
...Bioinformatics resources for the analysis and visualization of ribosome profiling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on...3901 days ago
Research Fellow @ Mendel laboratory
...e of hot applications and projects, dealing with microarrays, RNA-Seq and miRNA-Seq data. Main activities will be: (i) data analysis (short-reads mapping, variants call and annotation...3798 days ago
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Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...rlying complex traits. The laboratory was instrumental in the earliest studies developing and applying linkage disequilibrium methods as genetic mapping tools. The laboratory also d...3855 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config auto_version auto_he...2293 days ago
Mapping with BWA-mem or BWA-sampe in one go with python script !
BAM files and mapping BESST requires sorted and indexed BAM files as input. Any read aligner +...indexed BAM files with BWA-mem or BWA-sampe in one go. An example call for mapping with this script is python...2109 days ago
Tags: Tiger, big cat, house cat, sequencing, genome, DNA, gene, mapping, Bengal tiger, Panthera
3867 days ago
Scientists map 17,294 proteins produced in human body
Indian scientists missed the genomic profiling bus, but they've more than made up for it by creating the first human proteome map which is an extension of the genomic study. Till now, here is no direct equivalent for the human proteome. But recently two groups present mass spectrometry-based anal...Tags: Bioinformatics, Computational Biology, IOB, Protein, Mapping
3614 days ago
Comment on "URMAP, an ultra-fast read mapper"
...e -threads option specifies the number of processor threads to use for mapping. Default is the number of CPU...or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3x faster...1268 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...vily based on too low span coverage, or reads mapping too far or too close to each...to get information on how to create a perfect mapping file, and create a perfect ma...ap which creates a bam file of read-pair mappings. Do the same thing you did w...1322 days ago