Results for "mapping"
Comments
Comment on "URMAP, an ultra-fast read mapper"
...e -threads option specifies the number of processor threads to use for mapping. Default is the number of CPU...or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3x faster...1271 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...vily based on too low span coverage, or reads mapping too far or too close to each...to get information on how to create a perfect mapping file, and create a perfect ma...ap which creates a bam file of read-pair mappings. Do the same thing you did w...1325 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...gned read part to trigger a bwt-based query. [300] -k --bwt-kmer [INT] Length of BWT-seed. [19] -f --fastest Use GEM-mapper's fastest mode(--fast-mapping=0). [false] Scoring options:...2110 days ago
- ...query files, one per line -s <value>, --segLength <value> mapping segment length [default : 5,0...will be ignored --noSplit disable splitting of input sequences during mapping [enabled by default] --perc_...
2110 days ago
- ...ferent phases of the process. This tool evaluates unmapped, poorly and accurately mapped sequences independently to infer possible causes of poor mapping. SolexaQA SolexaQA ...
2125 days ago
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do n...2163 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...uilt from the reference sequence and used for mapping. Output SAM alignments will b...ent Assembly format. sam - Sequence Alignment/Mapping format. [auto] -L, --out-fmt...placeholder for future features, such as cDNA mapping) [normal] --overlapper - Perf...2280 days ago
Comment on "Bioinformatics approach to Boar Taint"
Fine mapping of a QTL affecting levels of skatole on pig chromosome 7 https://bmcgenet.biomedcentral.com/articles/10.1186/s12863-017-0549-82382 days ago
- ...ple of reported issue: https://www.biostars.org/p/231071/ Other possible issues: Creating empty output files Less number of genes mapping to KEGG when using GeneSymbol...
2649 days ago
- ...rt size (INT) is used instead of auto estimation. -s INT : Mapping seed length (default 32)...d-end (Mate-pair) input" below OTHER OPTIONS -s INT : Mapping seed length (default 32)...
2787 days ago
