Results for "methylation"
Blogs
List of cancer genomics research web resources !
...s of tumor profile; Data from 90 studies involving more than 10,000 patients MethyCancer http://methycancer.psych.ac.cn Relationship among DNA methylation, gene expression and cancer...2310 days ago
List of motif discovery tools !
...omplex with major histocompatibility complex (MHC) proteins and kinases. MeMo -- a web tool for prediction of protein methylation modifications Predict protein methylation sites. MegaMotifBase --...1983 days ago
Bookmarks
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA,...3695 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its v...
2882 days ago
- +3 more Bookmarks
Files
- ...rategy to tackle this deadly cancer. Hence we need to find out new therapeutic target. One way is to look the relationships between mRNA, methylation and miRNA data of patients wi...
3550 days ago
Top-level pages
Next generation sequencing in R or bioconductor environment
...riments is the analysis of splice junctions. The following software suggestions provide this utility: ERANGE TopHat SpliceMap SplitSeek DNA-Methylation Data Analysis methylPipe...3614 days ago
Commercial and public next-gen-seq (NGS) software
...Streamlined analysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA..."Shotgun Bisulphite Sequencing of the Arabidopsis Genome Reveals DNA Methylation Patterning" Nature paper by C...3508 days ago
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Wire posts
News
Surrogate Variable Analysis (SVA)
...-dimensional data sets. Surrogate variables are covariates constructed directly from high-dimensional data (like gene expression/RNA sequencing/methylation/brain imaging data) that can...3465 days ago
Opportunity posts
Bioinformatics JRF vacancy at ICGEB, New Delhi
Junior Research Fellow for a DBT sponsored project entitled "Computational and experimental characterization of stage specific arginine methylation in P. falciparum proteome". Candi...3563 days ago
RA Bioinformatics at NATIONAL INSTITUTE OF BIOMEDICAL GENOMICS, INDIA
...to develop a user-accessible resource for integrated analysis and visualization of multi-OMICs data sets (including gene expression, genotype, methylation, microRNA, etc.). Data sets g...2465 days ago
ResearchLabs posts
- ...roaches and which may exhibit interesting mechanistic origins. We are also interested in the large-scale integration of genomic, expression, methylation and proteomic data sets, as w...
3256 days ago
Video
Genome + Epigenome = New Understanding of the Pathogens in Your Food
...ity for rapid genome rearrangement. The 100K Pathogen Genome Project he leads is using PacBio long-read sequencing to close genomes and analyze methylation; Weimer reports that his team...3862 days ago
Tags
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: h...Tags: Encode, UCSC, genome browser, Sequencing, RNA-Seq, Chip-Seq, Epigenomics, Methylation, histone modification, regulatory elements, HMM
3695 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent SureSelect methyl-seq. In addition, methylKit can deal ...
Tags: Bioinformatics, methylKit, Methylation, DNA, Analysis, Genome, NGS, Sequence
2882 days ago
- +1 more Tags
Comments
- ...re is a wrapper script to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence f...
2127 days ago
Comment on "Encode sequencing data freely available to download and use for academic means"
You can access the collected papers by exploring the thematic ENCODE threads with topics such as DNA methylation, RNA or machine learning. http://www.nature.com/encode/#/threads3695 days ago
