BOL

Results for "micro RNA"

Bio-Scripts

• • Nishi Singh@nishi

  

  For a given DNA sequence find its RNA transcript, find its reverse complement and check if the reverse complement contains a start codon

  #!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DNA; $RNA =~ s/T/U/g; pr...

  2906 days ago

• • Neelam Jha@neelam

  

  Perl script introduces control structures, arrays and hashes.

  #!/usr/bin/env perl use strict; use warnings; my @first_array = ('DNA', 'ATGCGTGC', 5, 'RNA', 'AUGC'); print $first_arra...r for (my $i=0; $i 'ATCGATGCT', 'RNA' => 'AUGC',...

  2851 days ago

• • Rahul Nayak@rahul

  

  Biological Sequence handling with Perl !

  package Sequence::Generic; # File: Sequence/Generic.pm...$self->{'type'} = $type || ($sequence=~/u/i ? 'RNA' : 'DNA'); } return $se...= $self->{'data'}; return $seq unless $self->is_RNA; $seq=~tr/T/U/; ret...

  2170 days ago

• • Jit@jit.aber

  

  Running Trinity on RNA-seq !

  ➜ trinityrnaseq-Trinity-v2.6.6 git:(master...CMD: /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/util/..//ut...touch /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...ir -p /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...ir -p /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out...

  2116 days ago

• • Surabhi Chaudhary@surabhi

  

  Download with Snakemake !

  # list sample names & download URLs. sample_links = {"ERR...low SAMPLES=sample_links.keys() # download yeast rna-seq data from Schurch et al,...udy rule download_all: input: expand("rnaseq/raw_data/{sample}.fq.gz",...

  1505 days ago

• • Jit@jit.aber

  

  Downloading GATK !

  ...pdir= option to select an alternate temp location. USAGE: [-...l) Collects reference and alternate allele counts at specified si...rm metagenomic analysis, e.g. microbial community composition a...entsSAMSpark (BETA Tool) (Internal) Examines aligned contigs fr...

  2065 days ago