Results for "microbial"
Tags
RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices used in population and community studies on-the-fly. Availability: RAMI is licensed under GNU GPL and can be run or downloaded from&n...Tags: RAMI, tool, identification, characterization, phylogenetic, clusters, microbial, communities
2447 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive ...Tags: Harvest, alignment, visualization, intraspecific, microbial, genomes, recombination, detection, phylogenetic, trees
2325 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the input-box by selecting the type of identifier and pasting identifiers (one per line) or b...Tags: MGcV, microbial, genomic, context, viewer, comparative, genome, analysis
2273 days ago
- CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Ass...
Tags: CheckM, Assessing, quality, microbial, genomes, recovered, isolates, single, cells, metagenomes, Validation
2159 days ago
postdoctoral fellow for a large-scale microbial comparative genomics !
Asaf Levy hiring a postdoctoral fellow for a large-scale microbial comparative genomics project at the Hebrew University of Jerusalem (Israel). The project is a continuation of Levy Asaf et al. Nature Genetics 2018 paper. Requirements: 1.Experience with programming in at least one programmin...Tags: postdoctoral, fellow, large-scale, microbial, comparative, genomics
1087 days ago
- PPanGGOLiN (Gautreau et al. 2020) is a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designed to scale up to tens of thousands of genomes. It has the specificity to partition the pangenome ...
Tags: PPanGGOLiN, Depicting, microbial, species, diversity, Partitioned, PanGenome, Graph, Linked, Neighbors
79 days ago
CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for comparative microbial genomics. The package is a customized operating system, based on Xubuntu 10.10, available through the open source Ubuntu project. The system can be installed on a virtual computer, allowing the user to run the sys...Tags: CBS, Comparative, Microbial, Genomics, BioTools, download, page
2067 days ago
