Results for "microbial"

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  • RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities

    RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices used in population and community studies on-the-fly. Availability: RAMI is licensed under GNU GPL and can be run or downloaded from&n...

    Tags: RAMI, tool, identification, characterization, phylogenetic, clusters, microbial, communities

    130 days ago

  • Harvest: a suite of core-genome alignment and visualization tools

    Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive ...

    Tags: Harvest, alignment, visualization, intraspecific, microbial, genomes, recombination, detection, phylogenetic, trees

    8 days ago