Results for "motif"
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Public Databases for Bioinformatics !
...u must chown /mnt/lab_data/$LAB/ lab accessible data should store lab project data here e.g. ATAC-seq prediction data, enhancer prediction, motif calls /srv/scratch/$USER...1129 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...analysis and comparative genomics. Sequence analysis: Multiple sequence alignment, sequence search and clustering, function prediction, motif discovery, functional site re...3489 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such...2921 days ago
Method in Comparative genomics !!
...t novel methods for the systematic de novo identification of regulatory motifs. The methods do not rely on...ion and in that way differ from the current literature on computational motif discovery. Based on the genom...2724 days ago
Finding Patterns in Biological Sequences
...licly available tools and databases for pattern discovery. On-line supplement is available through http://genetics.uwaterloo.ca/∼tvinar/cs798g/motif.2681 days ago
- Motif based sequence analysis suits...e biologist to discover novel motifs in collections of unaligned...rform a wide variety of other motif-based analyses. The MEME Sui...rotein sequences. It provides motif discovery algorithms using bo...an), scanning for clusters of motifs (MCAST), comparing motifs to...
2680 days ago
- ...q reads Genome assembly &mdash k-mers, De Brujin graph construction and representation, long-read technology and read-overlap graph assembly Motif finding via Gibbs sampling G...
2339 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...fer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures mo...2300 days ago
BLAST options, setting and defaults
.... BLAST is best used for sequence similarity searching, rather than for motif searching. For searches using...tool that may yield different results from BLAST, and may be useful for motif searching, is FASTA. To...1963 days ago
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-c C...1929 days ago
