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Results for "multifasta"

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• • Shruti Paniwala@shruti

  

  Extract a fasta sequence from multifasta file: samtools faidx multitest.fa and then samtools faidx multitest.fa fasta_id > out.fa #Samtools #Fasta #Extract #Multifasta

  Tags: Samtools, Fasta, Extract, Multifasta

  2733 days ago

• • Jit@jit.aber

  

  perl -pe '/^>/ ? print "\n" : chomp' LR.fasta | tail -n +2 > out.fasta #singleLine #Multifasta #Multi2Single

  Tags: singleLine, Multifasta, Multi2Single

  2081 days ago

• • Archana Malhotra@archana

  

  How to remove a fasta sequence by header from a multifasta file ?

  >AAAAGTCGTGC >BBBAGTGCGGGTG Remove AAA and keep only BBB

  Tags: remove, delete, multifasta, fasta, header

  2355 days ago

• • Rahul Nayak@rahul

  

  #Split #multifasta $ cat hg18.fa | awk '{ if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")} print $0 > filename }'

  Tags: Split, multifasta

  2202 days ago

• • Rahul Nayak@rahul

  

  Split a multi-FASTA file into individual FASTA files: awk '/^>/{s=++d".fa"} {print > s}' multi.fa #split #multifasta

  Tags: split, multifasta

  1922 days ago

• • Neelam Jha@neelam

  

  Multifasta 2 singlefasta cat toy.fasta| awk '{ if (substr($0, 1, 1)==">" {filename=(substr($0,2) ".fa")} print $0 > filename }' #Split #fasta #multifasta

  Tags: Split, fasta, multifasta

  1607 days ago

• • BioStar@biostar

  

  Split the #multifasta to #singlefasta awk '$0 ~ "^>" { match($1, /^>([^:]+)/, id); filename=id[1]} {print >> filename".fa"}' input.fa

  Tags: multifasta, singlefasta

  1385 days ago

• • BioStar@biostar

  

  Delete all the headers from multifasta file $ awk 'BEGIN {print ">"ARGV[1]};!/^>/{print}' test.fa #fasta #delete #header #multifasta

  Tags: fasta, delete, header, multifasta

  89 days ago