Results for "ncbi"
Users
About me: ...r.google.co.uk/citations?user=ySm4BzcAAAAJ&hl=en ResearchGate @ https://www.researchgate.net/profile/Jitendra_Narayan PubMed @ https://pubmed.ncbi.nlm.nih.gov/?term=Narayan+Jit...60 days ago
Blogs
List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scripting language for working with big data pipelines in computer systems of diff...1124 days ago
Tools to detect synteny blocks regions among multiple genomes
...lso be referred to as shared synteny. The NHBLI/NCBI Glossary define synteny as &l...and importance of all these regions (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2...s in ancient synteny blocks. SyDiG (http://www.ncbi.nlm.nih.gov/pubmed/21441096)...2591 days ago
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Bookmarks
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs...3891 days ago
Next Generation Sequencing (NGS) Tutorials
...1 DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089...3469 days ago
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Pages
Virtual Bioinformatics Online Tutorial
...atics Distance Learning - Bioinformatics and Functional genomics courses offered by IMC Bioinformatics, University of Tampere Tutorials using NCBI Bioinformtics Tools3902 days ago
Genome Assembly Tools and Software - PART2 !!
...UMD consists of the UMD Trimmer, UMD Overlapper and a modified version of Phrap.It is capable of assembling data downloaded directly from the NCBI Trace Archive. The pipeline r...2667 days ago
Top-level pages
- ...ould be helpful for many labs, it is now available to the scientific community. Sequin Sequin is a stand-alone software tool developed by the NCBI for submitting and updating e...
3923 days ago
Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page provide links of some the good computer, biology and related tutorials. Introductio...3112 days ago
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Wire posts
News
- ...basic parser written in compiled languages as C++ and can be easily integrated into web applications or software pipelines. Find more @ http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3...
3871 days ago
- ...ative by the US National Center for Biotechnology Information (NCBI) has its way. On 22 October, the NCBI of Bethesda, Maryland, launch...searchers and their invited guests can use the system. But the NCBI's director David Lipman, who...
3827 days ago
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Opportunity posts
Postdoctoral Fellowship in Bioinformatics and Evolutionary Genomics
...e, as well as resources made available through NIH’s Center for Information Technology (CIT) and the National Center for Biotechnology Information (NCBI). For more information on...3303 days ago
Postdoctoral Fellowship in Bioinformatics at pesolelab
...eper understanding of gene and genome structure and function (please look at our PubMed publications for more details about our research http://www.ncbi.nlm.nih.gov/pubmed/?term=peso...3120 days ago
ResearchLabs posts
- ...onal genomics. Our interests in each of these areas are outlined briefly below, and a full list of publications is available via PubMed. http://www.ncbi.nlm.nih.gov/pubmed?cmd=search...
3842 days ago
- Interested in understanding the evolution of life. To obtain glimpses of such understanding, we employ existing and new methods of computational biology to perform research in several major areas. https://www.ncbi.nlm.nih.gov/research/groups/koonin/
2289 days ago
Fun
Bioinformatician become producer/director !!!
...: Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jayenge R...Rehta Hai PDB Ek Numbari Structure Dus Numbari GCG Karo Sajana Naukar NCBI Ka 1942 -- A KEGG Story Alg...3900 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3890 days ago
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3877 days ago
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Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1198 days ago
Python script to download covid genome !
...s://www.gisaid.org/ has more (1200?), but they require you to sign up import requests import yaml seqs = yaml.load(requests.get("https://www.ncbi.nlm.nih.gov/core/assets/genba...1117 days ago
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Groups
...bioinformatics. This group is dedicated to discuss the features, uses, and application of BioJava in biological researchs. Reference @ http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3...3884 days ago
Tags
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @A...Tags: fasta, multiple fasta, ncbi, entrez, perl
3891 days ago
- gene_info recalculated daily--------------------------------------------------------------------------- tab-delimited one line per GeneID Column header line is the first line in the file. Note: subsets of gene_info are available in the DATA/GENE_INFO directory (described later)-------------------...
Tags: Details, annotation, genes, gene_info, function, ncbi, detail
1922 days ago
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Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...ionship or biological interest. Obtain the genome sequences: Download the genome sequences of the selected species from a public database, such as NCBI or Ensembl. Gene annotation:...404 days ago
Comment on "Basic command-line to run BLAST"
...earches can be performed against many different databases, including the NCBI GenBank, RefSeq, and non-redu...been set, the BLAST search can be run. This can be done online using the NCBI BLAST website or locally usin...404 days ago
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