Results for "ncbi"

Tags

  • Download mutliple fasta file from NCBI in one GO!!

    if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @A...

    Tags: fasta, multiple fasta, ncbi, entrez, perl

    3873 days ago

  • Detail annotation of genes !

    gene_info recalculated daily--------------------------------------------------------------------------- tab-delimited one line per GeneID Column header line is the first line in the file. Note: subsets of gene_info are available in the DATA/GENE_INFO directory (described later)-------------------...

    Tags: Details, annotation, genes, gene_info, function, ncbi, detail

    1904 days ago

  • Explore taxdump files !

    This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi.nih.gov/pub/taxonomy/ The content of the archive -------------------------- It may look like this: delnodes.dmp division.dmp gencode.dmp merged.dmp names.dmp nodes.dmp readme.txt The readme.txt file gives ...

    Tags: extract, taxdump, readme, taxonomy, ncbi

    1511 days ago

  • Biological databases !

    Now a days there are a lots of genomics databases available around the world. This bookmark is created to provide all links in one place ... ftp://ftp.ncbi.nih.gov/genomes/ https://hgdownload.soe.ucsc.edu/downloads.html

    Tags: download, database, ncbi, ftp, genome, dna, reads, genome, assembly, files, ucsc

    1507 days ago

  • ncbi-datasets-cli -- Quickstart: command line tools !

    Install and use the NCBI Datasets command line tools The NCBI Datasets datasets command line tools are datasets and dataformat . Use datasets to download biological sequence data across all domains of life from NCBI. Use dataformat to convert metadata fr...

    Tags: ncbi-datasets-cli, database, download, ncbi, genome, genes, datasets

    843 days ago

  • NCBI PSI-BLAST Tutorial

    http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.

    Tags: PSI Blast, BLAST, NCBI, Alignment, Search, Sequence

    3871 days ago

  • PubMed opens for comment

    The informal conversations that researchers have at scientific meetings look set to move online, if a new initiative by the US National Center for Biotechnology Information (NCBI) has its way. On 22 October, the NCBI of Bethesda, Maryland, launched the pilot phase of a programme called PubMed Com...

    Tags: PubMed, Research, NCBI

    3809 days ago

  • Conserved Domain Database (CDD) version 3.11 released

    National Center for Biotechnology Information (NCBI) Conserved Domain Database (CDD) version 3.11 is now available with 596 new or updated NCBI-curated and 49,641 total domain models. The new version now contains the most recent Pfam release 27. Updates to the Conserved Domain Database include...

    Tags: Conserve, Domain, CDD, PSSMs, NCBI

    3690 days ago

  • Update Genome Workbench 2.7.15 released

    NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data. Genome Workbench can display sequence data in many ways, includ...

    Tags: Bioinformatics, Journals, Computational Biology, NCBI, Workbench, Genome, Visualization

    3684 days ago

  • NCBI Gene Screencast

    A short walkthrough of the NCBI Gene page

    Tags: NCBI, Gene, Screencast

    3591 days ago