Results for "next generation"
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Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others)...2891 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a referen...2891 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEM...format to be entered into GAEMR’s analysis pipeline, hence enabling the generation of standard reports. GAEMR&r...
2866 days ago
- ...by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sa...ols is a popular open-source tool used in next-generation sequence analysis. This prime..., and is geared towards those new to next-generation sequence analysis. The primer...
2857 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus acce...
2803 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en...per script OPERA-long-read that enables scaffolding with long-reads from third-generation sequencing technologies (PacB...2780 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large volume of next-generation sequencing (NGS) data. NGS technologies brought a dramatic shift in the w...
2783 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results...2781 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such bi...
2738 days ago
- ...of simulation tools to generate synthetic next-generation sequencing reads. ART s.../mate-pair reads of three major commercial next-generation sequencing platforms: Illumin...benchmark a variety of method or tools for next-generation sequencing data analysis, inc...
2724 days ago
