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Results for "next-generation"

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• • Abhimanyu Singh@abhimanyu

  

  Alignment-free sequence comparison tools available for next-generation sequencing data analysis

  kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances from reference sequences and RNA-seq data (k-...

  Tags: Alignment-free, sequence, comparison, tools, next-generation, sequencing, analysis

  2354 days ago

• • Jit@jit.aber

  

  Magic-BLAST: a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.

  Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up ...

  Tags: Magic-BLAST, mapping, next-generation, RNA, DNA, sequencing, whole, genome, transcriptome.

  2305 days ago

• • Rahul Nayak@rahul

  

  HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads

  HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on an extension of BWT for graphs [Sirén et al. 2014], we designed and implemented a ...

  Tags: HISAT2, fast, sensitive, alignment, program, mapping, next-generation, sequencing, reads, tools

  2172 days ago

• • Jit@jit.aber

  

  DeepVariant : an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant relies on ...

  Tags: DeepVariant, analysis, pipeline, deep, neural, network, genetic, variants, next-generation, DNA, sequencing, data

  1545 days ago

• • Rahul Nayak@rahul

  

  FastProNGS: fast preprocessing of next-generation sequencing reads

  FastProNGS to integrate the quality control process with automatic adapter removal. Parallel processing was implemented to speed up the process by allocating multiple threads. Compared with similar up-to-date preprocessing tools, FastProNGS is by far the fastest. 

  Tags: FastProNGS, fast, preprocessing, next-generation, sequencing, reads

  1209 days ago