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Results for "ngs"

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• • John Parker@parker

  

  NGS analysis pipeline http://www.egr.msu.edu/changroup/Protocols/NGS%20analysis%20example%20of%20a%20pipeline.html #Pipeline #NGS #Genomics #Tutorial

  Tags: Pipeline, NGS, Genomics, Tutorial

  3605 days ago

• • Radha Agarkar@radhaagarkar

  

  Webinar http://webinars.sciencemag.org/webinar/archive/importance-bioinformatics-ngs #NGS #Webinar

  Tags: NGS, Webinar

  3632 days ago

• • Jit@jit.aber

  

  Extract list of read ID from bam file: samtools view mbi.sorted.bam |perl -ne '/ID/ && print' > extractedID.sam #Extract #Ids #SAM #BAM #NGS

  Tags: Extract, Ids, SAM, BAM, NGS

  3619 days ago

• • Jit@jit.aber

  

  FastaQ 2 Fasta Oneliner: paste - - - -< totalRNA_placental_1.fastq | perl -pale'$_="@F[0..1]"'|tr "\^@" "\>" | perl -pale 's/\s/\n/g' #Oneliner #NGS #FastaQ #Fasta

  Tags: Oneliner, NGS, FastaQ, Fasta

  3619 days ago

• • Jitendra Narayan@admin

  

  Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. https://github.com/lh3/seqtk #FASTA #FASTAQ #NGS

  Tags: FASTA, FASTAQ, NGS

  3612 days ago

• • John Parker@parker

  

  Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet

  Tags: Assembly, NGS, Bacteria, Genome, Tricks, Tips, Velvet

  3611 days ago

• • Jitendra Narayan@admin

  

  R getting strong for NGS analysis http://manuals.bioinformatics.ucr.edu/home/ht-seq #Packages #NGS #R #Bioconductor #Bowtie #Sequence #Analysis #SNP

  Tags: Packages, NGS, R, Bioconductor, Bowtie, Sequence, Analysis, SNP

  3609 days ago

• • Rahul Nayak@rahul

  

  NGSplot program allows you to easily visualize your NGS samples at functional genomic regions. https://code.google.com/p/ngsplot/ #NGS #ngs #Plot #ngsplot #Visualize #R

  Tags: NGS, ngs, Plot, ngsplot, Visualize, R

  3608 days ago

• • Jitendra Narayan@admin

  

  Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS

  Tags: Tutorial, ABySS, Bacteria, Reads, Assembly, Genomics, NGS

  3605 days ago

• • Alok Prajapati@Alok

  

  Bioinformatics tutorial at http://www.ebi.ac.uk/training/online/course/ebi-next-generation-sequencing-practical-course/how-take-course #Tutorial #Notes #NGS #EBI #Online #Course

  Tags: Tutorial, Notes, NGS, EBI, Online, Course

  3591 days ago

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