Results for "non-coding SNPs"
Bio-Scripts
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bioqueen@bioqueen-Lenovo-ideapad-320-15ISK:~/Downloads/$ sudo apt install ./atom-...1166 days ago
Perl script to find coding regions in DNA sequences
#!/usr/bin/perl -w use strict; # if the number of input arguments is lower than 2 # return a message showing the error if (scalar(@ARGV) < 2) { print "d...2145 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/...variant calling and genotyping for short variants (SNPs, SNVs and Indels) Combin...peCaller Call germline SNPs and indels via local re-assem...
2065 days ago
Perl script to count occurrence of a character !
#!/usr/bin/env perl # -*- coding: utf-8 -*- #!/usr/bin/perl use strict; use warnings; my %count_of; while ( ) { my @val = split "\t", $_; #my (...1891 days ago
Create random 10000 SNPs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_co...n specified: titv_ratio = 0.5 [Sun Jan 10 16:05:57 2021] Introducing random SNPs based on the following parame...1201 days ago
Python script to read FASTA and FASTQ file !
# !/usr/bin/env python3 # -*- coding: utf-8 -*- from pysam import FastxFile def read_fasta_q_file(fasta_q_file): """Parse FASTA/Q file using `pysam...967 days ago
