2107 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/...tree Reading state information... Done Note, selectin...tu1) ... Processing triggers for bamfdaemon (0.5.3+18.04.20180..., show, star, starred, stars, test,...text editor that you can use for coding. But did you know that...1139 days ago
Perl script to insert the DNA string in genome
#!/usr/bin/perl use warnings; use strict; use Bio::SeqIO; use Bio:...GV[1]; # output fasta file my $chr="test"; #insertion chromosome my...ion my $seq_in = Bio::SeqIO->new( -forma...ile); my $seq_out = Bio::SeqIO->new( -format => 'fasta',-file => ">".$ou...2622 days ago
2215 days ago
Perl script to find coding regions in DNA sequences
#!/usr/bin/perl -w use strict; # if the number of input...$codon,$freq); my $line; # for each line in the file (tableo...n"; exit(1); } # FASTA format: # >header containing a...; # the likelihood ratio is for a...%.2f\n",$r; __END__ To test the program, save this two fi...2118 days ago
2114 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for dynamic languages jit@jit-...hlibs - Determine flags for building shared libraries.......ndian. auto::va_ptr - Test.....yes. auto::snprintf - Test for snprintf.........................1500 days ago
2062 days ago
2062 days ago
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2018 days ago