2460 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
#Inspired from online search sudo apt-get update sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-dev sudo apt-get install zlib1g-dev sudo...1548 days ago
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/ $ curl -O https://repo....Anaconda3-2019.03-Linux-x86_64.sh $ bash Anaconda3-2019.03-Linux-x86_64.sh In order...1546 days ago
Bash command to install Miniconda !
(base) [wsu29@bladeamd-2 tmp]$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linu...md-2 tmp]$ sh Miniconda3-latest-Linux-x86_64.sh Welcome to Miniconda3 4.7.12 In order...1546 days ago
Pack a perl program with their dependencies on Ubuntu !
...b.pl at https://bioinformaticsonline.com/snippets/view/41440/perl-sc...$ ./web https://bioinformaticsonline.com #It return this W...all your medical needs like, online doctor appointment, Online bo...studies in public health and medicine. Biostatistics experts arri...1502 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$ cd jittm.../jittmp$ bash Anaconda3-2019.03-Linux-x86_64.sh Welcome to Anaconda3 2019.03 In order...1502 days ago
Bash online to update Linux OS
sudo bash -c 'for i in update {,full-,dist-}upgrade auto{remove,clean}; do apt-get $i -y; done'681 days ago
980 days ago
Perl script to calculate the basic stats of the assembled genome !
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; # Input file containing the ge...tigs++; push @contig_lengths, $length; } # Sort contig lengths in descending order...85 days ago
Python script for basic stats of the assembled genome !
from Bio import SeqIO import statistics # Input file containing the genome assembly in FAS...ontigs += 1 contig_lengths.append(length) # Sort contig lengths in descending order...85 days ago