R script to visualize fastANI core-genome comparison
...ose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR packa...visual_file=commandArgs(TRUE)[3] library(genoPlotR) #Read fastANI output comparison...1064 days ago
2879 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...( query => undef, outputFile => undef, database...=> \$param{query}, 'o|output_file=s' => \$param{outputFile...y} ) ) or !( defined( $param{outputFile} ) ) or !( defined(...open( my $OUTFILE, ">" . $param{outputFile} ) or die("Error...2879 days ago
A multilayer perceptron (MLP) neural network in Perl
...#################################### #Tanh hidden neurons #Linear output neuron #To include an inpu...$errThisPat; my $outPred; my $RMSerror; my @trainInputs; my @trainOutput; # the outputs of the hi...2879 days ago
Blast result parser with Perl and Bioperl
...GNU General Public License. # This script will parse a NCBI blastx output file and output the top N hits of each blast...query sequence print OUT $result->query_length; # output "no hits found" if there is n...2877 days ago
Perl subroutine to read and write files
# Input output (InOut) the file # usage: # @array = InOut('read',$file) # $string = InO...f($bit eq 'write'){ open InOut,"> $file" or die "Cannot open $file for output: $!\n"; print InOut ref...2829 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...about a specific command. Options: --color Enable colored output...with `no-` to set it to false such as --no-color to disable colored output. #Atom is essentially a te...1139 days ago
Perl script to insert sequence in contig !!
...TAG"; print "s = $s \n"; print 'insert = '.($s = insertSEQintoCONTIGatLOC( "CCCC ", $s , 26 ))."\n"; print " (now, s = '$s' ) \n"; # OUTPUT: # s = ATATGATGATAGATGATAGTA...2671 days ago
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