Results for "overlap"
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R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colour and to also v...2784 days ago
- ...llapsed by other assemblers. Its ultimate goal is to find a minimal set ofunitigs to represent all the information in raw reads.Fermi follows the overlap-layout-consensus paradigm and...
2776 days ago
- ...s takes a set of DMPs, such as those hits above genome-wide significance threshold in an EWAS study, and analyses whether there is enrichment for overlap of putative functional elemen...
2727 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...containing assembled contigs of any length in Multi-FASTA format to produce an improved contig set based on OLC based assembly. All overlap parameters (Minimum Overlap Length, Identity, etc) are us...2675 days ago
- ...noring: matches not satisfying cut-offs (--identity and --overlap) suboptimal matches (only best match of each query to reference is kept) and removing overlapping matches on reference....
2675 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would...ften have long repetitive regions, and they are hard to assemble using overlap-consensus-layout approach. De...
2674 days ago
- ...ng assembly. The final sequence will correct any uncalled bases in the overlapping region using the complementary strand. When mismatches occur in the overlapping region, the base with the...
2640 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates o...2528 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims t...2500 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by remov...d on minimum cost flow analysis of the overlap graph and then merged to cont...tion of the computing time of existing overlap-layout-consensus assemblers....2472 days ago
