Results for "overlap"
Top-level pages
...n computed. - The main difference with the "divide and conquer" approach is, subproblems are independent in divide and conquer, where as the overlap of subproblems occur in dynam...3929 days ago
List of In-silico Binding Site Prediction Tools
...as considered a true-positive if the predicted pocket had at-least 10% overlap with the actual ligand. The p...are in the first rank itself. 77% of the predictions had at least 50% overlap with the experimentally obser...3727 days ago
Next generation sequencing in R or bioconductor environment
...line SPP Tutorial MACS SIPeS RNA-Seq Analysis Counting Reads that Overlap with Annotation Ranges ...n functions for read counting provided by this infrastructure are countOverlaps and summarizeOverlaps. For t...3607 days ago
Commercial and public next-gen-seq (NGS) software
...is an assembler dedicated to process the millions of very short reads produced by the Illumina Genome Analyzer. Edena is based on the traditional overlap layout paradigm. By D. Hernan...3502 days ago
Software packages for next gen sequence analysis
...is an assembler dedicated to process the millions of very short reads produced by the Illumina Genome Analyzer. Edena is based on the traditional overlap layout paradigm. By D. Hernan...3225 days ago
Genome Assembly Tools and Software - PART1 !!
...family-specic gene assembly, homology-guided overlap graph construction, and caref...nes the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approa...embedded in the sequence, and reconstruct an overlapping sequence. ZORRO 2.2...2668 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...Do General mapper Minimap Lightweight and fast read mapper and read overlap detector (uses the concept of...rbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ONT) using the Overlap-Layout Consensus (OLC) approa...2354 days ago
Some useful Bioinformatics links
...nt program https://mafft.cbrc.jp/alignment/software/tips.html Omega | Overlap-graph de novo Assembler for M...ega.omicsbio.org/ abiswas-odu/Disco: Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metage...2224 days ago
- ...=10, mem=16, minLength=200, nocleaning=True, nogapclosing=True, norearrangements=False, noreduction=True, noscaffolding=True, outdir='test/run1', overlap=0.8, reference='', resume=Fal...
2173 days ago
Bioinformatics tools for genome assembly !
...mbly. wtdbg2: A de Bruijn graph assembler for long reads, efficient for very large genomes. Shasta: A long-read assembler that uses the Overlap-Layout-Consensus approach, su...269 days ago
