Results for "overlap"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ne conserved synteny blocks. It reconstructs synteny blocks between pairwise comparison of multiple genomes. The reconstructed synteny blocks may overlap each other, be included in on...2600 days ago
String graph based genome assembly software and tools !
...oubleshoot an assembly if it runs into problems. 2. SAGE: String-overlap Assembly of GEnomes http...most assemblers, which are de Bruijn graph based, SAGE uses the string-overlap graph. SAGE builds upon great...2318 days ago
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Bookmarks
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colour and to also v...
2792 days ago
- ...llapsed by other assemblers. Its ultimate goal is to find a minimal set ofunitigs to represent all the information in raw reads.Fermi follows the overlap-layout-consensus paradigm and...
2785 days ago
- +22 more Bookmarks
Files
R Graphical Cookbook by Winston Chang
...ted for each figure is self-contained, i.e., all code required to produce the figure is included. This means that there is sometimes considerable overlap of code between several figur...2144 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...Assembly of GEnomesSAGE is a new string-overlap graph-based de novo genome assembler. Omega 1.0.2 – Overlap-graph de novo Assembler for M...es in an attempt to obtain all sequences that overlaps, directly or indirectly, wit...2675 days ago
Top-level pages
- ...n computed. - The main difference with the "divide and conquer" approach is, subproblems are independent in divide and conquer, where as the overlap of subproblems occur in dynam...
3936 days ago
List of In-silico Binding Site Prediction Tools
...as considered a true-positive if the predicted pocket had at-least 10% overlap with the actual ligand. The p...are in the first rank itself. 77% of the predictions had at least 50% overlap with the experimentally obser...3733 days ago
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Wire posts
ResearchLabs posts
- ...cal sections have experienced random rearrangements during evolution. In such cases functionally similar proteins may have less than 25% sequence overlap. More @ http://www.ncbs.re...
3874 days ago
Bio-Scripts
Tadpole is 250x faster than SPADes assembler !
...te: Shave and rinse can produce substantially better assemblies for low-depth data, but they are very slow for large metagenomes. Overlap parameters (for overlapping paired-end reads only):...965 days ago
Raku script to find overlaps between two bed files !
...$start1 = @fields1[1]; my $end1 = @fields1[2]; # Check for overlaps with intervals in the second...my $end2 = @fields2[2]; # Check for chromosome match and overlap if $chr1 eq $chr2 &&...84 days ago
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Tags
- DISCO is a multi threaded and multiprocess distributed memory overlap-layout-consensus (OLC) metagenome assembler. Disco was developed as a scalable assembler to assemble large metagenomes from billions of Illumina sequencing reads of complex microbial communities. Disco was parallelized for...
Tags: multiprocess, distributed, memory, overlap, layout, consensus, OLC, metagenome, assembler
2480 days ago
Comments
- ...bs (remote) rawErrorRate=fraction-error - The allowed difference in an overlap between two raw uncorrected r...eads. correctedErrorRate=fraction-error - The allowed difference in an overlap between two corrected reads....
2088 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...put results. Options are: sam - Standard SAM output (in normal and '-w overlap' modes). m5 - BLASR M5 format...re: illumina - Equivalent to: '-a gotoh -w normal -M 5 -X 4 -G 8 -E 6' overlap - Equivalent to: '-a anchor -...2282 days ago
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