Results for "pacbio"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...s Reads A fast and memory-efficient method for haplotype assembly from long gapless reads, like those produced by SMRT sequencing technologies (PacBio RS II) and Oxford Nanopore fl...2675 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...lding genome assembly with error-containing long sequence (e.g., ONT or PacBio reads, draft genomes) Softwa...Mash Species identification using assembled or unassembled Illumina, PacBio, and ONT data (based on MinHa...2360 days ago
- ...gen NxMate library number <#> (<#> = 1,2,..,9) --sanger <filename> file with Sanger reads --pacbio <filename> file with PacBio reads --nanopore <fi...
2340 days ago
Frequent parameters for bioinformatics tools !
...33” Filtlong --min_length 500 --min_mean_q 85 --min_window_q 65 FastQ Screen --aligner bowtie2' (bwa for PacBio) --subset 1000 (for PacBio) SPAdes --careful...1275 days ago
- ...mimicking the two main TGS technologies; (1) Pacific Biosciences (PacBio) and (2) Oxford Nan...ore (ONT). Listed below are some of the popular and recently introduced PacBio and ONT simulators. Links to...
572 days ago
Bioinformatics tools for genome assembly !
...nomes. MaSuRCA: A hybrid assembler that combines data from multiple sequencing technologies, such as Illumina and PacBio. Canu: A long-read assembler optimized for PacBio and Oxford Nanopore sequencin...275 days ago
Mitochondrial genome assembly tools !
...al genomes and annotate mitochondrial genes from trimmed read sequencing data. MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads MITObim:...232 days ago
