2236 days ago
Long reads mapper bash script !
...== "ont" ]; then $lamsaLoc aln -t $thread -T ont2d $refFasta $longReads > $fileName.out.sam elif [ $readsType == "pacbio" ]; then $lamsaLoc aln -t $thread -T pacbio $refFasta $longReads > $fileN...2107 days ago
Installing pb-assembly on Linux !
...# # PacBio(R) tools distributed via Bioc...e to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we make no warra...2019 days ago
Setting up falconUnzip conda environments for genome assembly !
...# # PacBio(R) tools distributed via Bioc...e to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we make no warra...1974 days ago
1710 days ago
913 days ago
Bash script to simulate a genome !
...iasm/issues/33 # Use Drosophila melongaster PacBio assembly cd /genetics/elbers...loid.fasta.gz \ illuminanames=t addslash=t \ pacbio=t pbmin=0.13 pbmax=0.17 \ re...${k}" # make 30x haploid coverage for PacBio CLR reads # error rate from...902 days ago