Results for "package"
Top-level pages
...n database search programs. Nucleic Acids Res. 25:3389–3402Pearson WR (2000) Flexible sequence similarity searching with the FASTA3 program package. Methods Mol. Biol. 132:185&n...3937 days ago
- ...databases. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex submissio Staden The Staden Package consists of a series of tools...
3932 days ago
Bioinformatics Courses Around the World
...Consiglio Nazionale delle Ricerche (CNR), Bari, ItalyDavid Judge, James Bonfield, three-day courseSequencing Project Management Using the Staden package, September 20 - 22, 1999 Eur...3933 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...Biol 11(12):220, 2010 Full Text DEGseq: an R package for identifying differentiall...1:R106, 2010 Full Text edgeR: a Bioconductor package for differential expression a...s Next-gen-seq software - a list of software packages, both commercial and open-so...3769 days ago
List of bioinformatics open source projects/software.
...entation environment EMBOSS http://emboss.sourceforge.net/ Suite of packages for sequencing, searching, e...g tool suite, for storing large nucleotide sequence alignments Staden Package Sequence assembly, editing a...3747 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...nd/coasim/index.htmlcosi The cosi package is written in C and is availa...a C++/Python library and program package for evolutionary genetics and...nts http://cran.r-project.org/web/packages/hapsim/index.htmlHAPSIMU A p...code.google.com/p/recodon/rlsim A package for simulating RNA-seq librar...3727 days ago
List of In-silico Binding Site Prediction Tools
...LUSIONS: The FunFOLD software is freely available as both a standalone package and a prediction server, prov...inity maps or MIFs. A python script named 'auto.py' is provided in the package and can be used to perform bi...3734 days ago
Next generation sequencing in R or bioconductor environment
...port for many more high-level packages like GenomicRanges, ShortRea...f Discovery cosmo The cosmo package allows to search a set of una...sed genome sequence. BSgenome packages exist for many common genome...nges The GenomicRanges package provides support for importin...3615 days ago
Commercial and public next-gen-seq (NGS) software
...id whole genome alignment of finished or draft sequence. Released as a package providing an efficient suffix...Latest versions available as part of the Vancouver Short Read Analysis Package MACS - Model-based Analysis f...3509 days ago
Software packages for next gen sequence analysis
...id whole genome alignment of finished or draft sequence. Released as a package providing an efficient suffix...Latest versions available as part of the Vancouver Short Read Analysis Package * MACS - Model-based Analysis...3232 days ago
