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Bio-Scripts

• • Jit@jit.aber

  

  Create a conda environment !

  JitMeta (base) ➜ JitMeta conda create --name JitMetaENV Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1198 days ago

• • Jit@jit.aber

  

  Install grabseqs with conda !

  (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1198 days ago

• • Neelam Jha@neelam

  

  Install NCBI entrez-direct and esearch using conda !

  $ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solvin...5262he881be0_2 Proceed ([y]/n)? y Downloading and Extracting Packages entrez-direct-13.9 | 5.2...

  1082 days ago

• • Shruti Paniwala@shruti

  

  R script to visualize fastANI core-genome comparison

  ####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse command...

  1082 days ago

• • LEGE@lege

  

  Install CANU with conda !

  ...s/setu/setu$ conda install -c bioconda/label/cf201901 canu Collecting package metadata (current_repodata.js...label/cf201901 Proceed ([y]/n)? y Downloading and Extracting Packages canu-1.4 | 7.0...

  1035 days ago

• • LEGE@lege

  

  Install Shasta using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda shasta Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1035 days ago

• • LEGE@lege

  

  Install CVSTK using codna !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda csvtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1035 days ago

• • LEGE@lege

  

  Install seqkit using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda seqkit Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1035 days ago

• • LEGE@lege

  

  Install Minimap2 using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda minimap2 Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1035 days ago

• • LEGE@lege

  

  Install seqtk using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda/label/cf201901 seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1035 days ago

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