Results for "pair-end"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to make sense of it, biologically. But, most of the newbie bi...3696 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH)...
3928 days ago
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Bookmarks
- Enzyme Portal- To look for information about the biology of a protein with enzymatic activity. The enzyme portal integrates many resources, most of them hosted by...
3885 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also su...1208 days ago
- +114 more Bookmarks
Pages
Keep Your Important SSH Session Running when You Disconnect from Server !!!
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with them with an ease. In our day to day simulation, analysis,...3692 days ago
Genome Assembly Tools and Software - PART2 !!
...e in polyploid genome assemblies. ELOPER 1.2 – Elongation of Paired-end Reads for de novo AssemblyELOPER is a pre-processing tool for pair-end sequences that produces a bet...2674 days ago
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Top-level pages
- Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an increasingly important tool to transform this data into inf...
3935 days ago
Bioinformatics Companies in India
Following are the list of top 30 bioinformatics companies in India. The companies name order does not follow any specific pattern. 1. Accelrys Software Solution Pvt Ltd...3914 days ago
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Wire posts
News
Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, attendees should be able to write sim...3940 days ago
Webinar: Wednesday 21 August 2013 at Noon EDT
This webinar will describe the use of combinatorial pooling to reconstruct gene sequences within BACs. Recent work in barley has shown that this level of sequence knowle...3908 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to an...3937 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference SciGenom Research Foundation (SGRF) and Institute of Genomics and Integrative Biology (IGIB)...3911 days ago
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ResearchLabs posts
- The laboratory is focused on the discovery and analysis of structural variation (SVs) from genomic sequence data. As part of the 1000 Genomes Project and other endeavors...
2981 days ago
- TheLab seek to understand the genetic factors contributing to genomic variation and phenotypic diversity. To this end, we employ molecular and bioinformatic tools to st...
2980 days ago
Video
How DNA is Packaged (Advanced)
Each chromosome consists of one continuous thread-like molecule of DNA coiled tightly around proteins, and contains a portion of the 6,400,000,000 basepairs (DNA buildin...3865 days ago
Bionics, Transhumanism, and the end of Evolution (Full Documentary)
Bionics, Transhumanism, and the end of Evolution (Full Documentary) ....3862 days ago
Bio-Scripts
- # To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/Ubuntu system admins should run: sudo apt-get install...
2133 days ago
Count the frequency of base G in a given DNA sequence
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the len...2906 days ago
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Tags
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it ...Tags: Bioinformatics, pair-end, read, merger, PEAR
2939 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-end reads from Arabidopsis thaliana with 1% base error. COPE connected over 99% of reads with 98.8% accuracy, whic...Tags: COPE, accurate, k-mer, pair-end, reads, connection, tool, genome, assembly
2331 days ago
Comments
- ...rates, and coverage levels. The wgsim tool is also open-source and available for free download. PIRS: PIRS (short for Profile-based Illumina pair-end Reads Simulator) is a short r...
404 days ago
Comment on "Sibelia: A comparative genomics tool"
Basic usage =========== In this manual it is assumed that "Sibelia" is properly installed and the directory with "Sibelia.py" is in your "PATH" environment variable o...1274 days ago
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