Results for "parallel"
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...thms are specified by supplying only the logic component. Serial or parallel Algorithms are usually dis...n of an algorithm at a time. This is a serial algorithm, as opposed to parallel algorithms, which take advant...3930 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ssemblies of mammalian genomes from massively parallel sequence data. Gnerre et al,...ibes Trans-ABySS, a pipeline to use the ABySS parallel assembler for de novo transcr...enome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar,...3764 days ago
Commercial and public next-gen-seq (NGS) software
...ce assembler that is designed for very short reads. The single-processor version is useful for assembling genomes up to 40-50 Mbases in size. The parallel version is implemented using...3503 days ago
Software packages for next gen sequence analysis
...ce assembler that is designed for very short reads. The single-processor version is useful for assembling genomes up to 40-50 Mbases in size. The parallel version is implemented using...3227 days ago
- ...t. NextGenerationSequencing A high-throughput sequencing method which parallelizes the sequencing process, p...y amplification reagents is formed around the bead/fragment component. Parallel amplification of millions of...
2853 days ago
Genome Assembly Tools and Software - PART1 !!
...r 2 – A scalable and fully parallelized Genome Assembler There...tput of new generation massively parallel sequencing machines and the a...ABySS 1.9.0 – de novo, parallel, paired-end Sequence Assemble...executables, being developed in parallel streams: cortex_con (primary...2670 days ago
- ...view -F4 sample.bam > sample.mapped.samsamtools view -f4 sample.bam > sample.unmapped.sam To gzip all your fastq files using gnu parallel and gzip: parallel gzip ::: *.fastq To gzip all...
2201 days ago
Parallel Processing with Perl !
...h do it for you very efficiently. One really useful module is Parallel::ForkManager. You can use Parallel::ForkManager to manage the nu...tep2: open you directory comtaining you split files and start Parallel::ForkManager.For example:open...2064 days ago
Steps to find all the repeats in the genome !
...Replace the following placeholders with appropriate values: <number_of_processors>: The number of processors/threads you want to use for parallel processing. <divergence_v...232 days ago
