Results for "parallel"
Bio-Scripts
Calculate ATGC percentage in parallel with perl
#!/usr/bin/perl use strict; use Parallel::ForkManager; use Bio::SeqIO; #usage: perl testParallel.pl my %sequences; my $seqio = Bio::SeqIO->ne...D's back to child specific information my $pm = new Parallel::ForkManager($max_procs);...2644 days ago
- ...ing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' Tests/AdHoc/Makefile.am: installing './depcomp' parallel-tests: installing './test-dri...
2139 days ago
- ...0:35:42 CMD: java -Xmx64m -XX:ParallelGCThreads=2 -jar /home/urbe/T...lean.fastq --pairs_together --PARALLEL_STATS Converting input fil...Converting input files. (in parallel)Monday, July 9, 2018: 10:51:2...Running CMD: /usr/bin/sort --parallel=40 -T . -S 250G -k 1,1n /home...
2115 days ago
- ...le IndexFeatureFile Creates an index for a feature file, e.g. VCF or BED file. ParallelCopyGCSDirectoryIntoHDFSSpark (BETA Tool) Parallel copy a file or directory from...
2063 days ago
Installing pb-assembly on Linux !
...Pango/1.40.3-foss-2016b GCC/4.8.2 parallel/20130122-goolf-1.4.10 GCC/4....2022 days ago
Perl script to run in parellel !
#!/usr/bin/perl use strict; use warnings; use Parallel::ForkManager; use Bio::SeqIO; my ($sequence_d...; my %genome=%{$sequence_data_ref}; my $n_processes = 4; my $pm = Parallel::ForkManager->new( $n_process...1675 days ago
To convert just one specific read group to fastq
...mkdir -p reads # Download the SRR data for each cat selected.txt | parallel fastq-dump -O reads -X 1000 -...# Generate a separate BAM file for each SAMPLE. cat selected.txt | parallel "picard FastqToSam F1=reads/{...1530 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...
1203 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...rawer.cpp.o [ 36%] Building CXX object src/CMakeFiles/i-visualize.dir/parallel.cpp.o [ 37%] Building CXX ob...ntDrawer.cpp.o [ 44%] Building CXX object src/CMakeFiles/i-adhore.dir/parallel.cpp.o /home/urbe/Tools/i-adh...1192 days ago
