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Results for "parallel"

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• • Rahul Nayak@rahul

  

  Comment on "Nanopolis: polish a genome assembly"

  ...draft.fa reads.fa | samtools sort -o reads.sorted.bam -T reads.tmp - samtools index reads.sorted.bam python nanopolish_makerange.py draft.fa | parallel --results nanopolish.results...

  2083 days ago

• • Jit@jit.aber

  

  Comment on "MashMap: a fast and approximate software for mapping long reads (PacBio/ONT) or assembly to reference genome(s)"

  ..._identity <value>, --pi <value> threshold for identity [default : 85] -t <value>, --threads <value> count of threads for parallel execution [default : 1] -o &...

  2107 days ago

• • Jit@jit.aber

  

  Comment on "Installing Perl environment on Linux"

  ...da is installed    ➜ parallelLastz git:(master) ✗ conda cre...use:# > source deactivate# ➜ parallelLastz git:(master) ✗ source ac...ivate myLocalPerl(myLocalPerl) ➜ parallelLastz git:(master) ✗ cpanm Par...nvs/myLocalPerl/lib/5.26.2 .) at parallelLastz.pl line 10.BEGIN failed-...

  2110 days ago

• • Poonam Mahapatra@poonam

  

  Comment on "CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing."

  ...nome. It is quite a complex beast that has HPC integration built in - though you can turn this off. However, large assembly jobs are best run in parallel, making HPC integration essen...

  2159 days ago

• • Martin Jones@martin

  

  Comment on "Commercial and public next-gen-seq (NGS) software"

  VarScanvariant detection in massively parallel sequencing data http://varscan.sourceforge.net/

  3532 days ago

• • Alok Prajapati@Alok

  

  Comment on "R and Bioconductor Tutorial"

  R/parallel – speeding up bioinformatics analysis with R http://www.biomedcentral.com/1471-2105/9/390

  3660 days ago

• • Aadesh Goswami@aadesh

  

  Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"

  Impact of Parallel Computing on Bioinformatics Algorithms are well documented in this paper http://icacct.apiit.edu.in/download/all%20chapters/CHAPTER-44.pdf Other useful links:http://icacct.apiit.edu.in/download/all%20chapters/

  3815 days ago

• • Madhvan Reddy@madhvan

  

  Comment on "Bioinformatician needs ten heads !!!"

  Ancient parallel computing ... ;)

  3896 days ago