Results for "phylogenetic"
Top-level pages
...ncluding primary sequence alignment, protein 3D structure alignment, phylogenetic tree construction, prediction...PsiBLAST [3]; studying evolutionary aspects, by the construction of phylogenetic trees from the pairwise diffe...3936 days ago
Phylogenetic for Bioinformatics
...ese molecular structures. phylogenetics is the study of evolutionary...data matrices. In other word, Phylogenetics, the science of phylogeny, i....For additional information on phylogenetics, see list of Phylogenetics R...ftware for the construction of phylogenetic trees BioEdit Coeloca...3935 days ago
List of bioinformatics open source projects/software.
...lysis Armadillo workflow platform Tool for designing and executing phylogenetic workflows AutoDock http://a...for big data in the genomic era T-REX WebServer Bioinformatics and phylogenetics webserver (NJ, PhyML, RAxML,...3746 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ySSP A program for the simulation of DNA sequence evolution across a phylogenetic tree http://www.rosenberglab....for the Monte Carlo simulation of molecular sequence evolution along phylogenetic trees. http://tree.bio.ed.ac....3726 days ago
Binding Site Prediction in Protein !
...ugin for PyMOL Binding Site Prediction ConSurf Identification of functional regions in proteins by surface-mapping of phylogenetic information CRESCEND...2191 days ago
Genome Assembly Tools and Software - PART1 !!
...assisted assembly using multiple references. It takes a short read assembly (a set of contigs), a set of related references and a corresponding phylogenetic tree and then assembles the c...2675 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...plying the least number of changes in character states is the best. phylogenetics -- Field of biology that dea...over. reticulation -- Joining of separate lineages on a phylogenetic tree, generally through hybri...2451 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...he tree topology (k-mer based) Software (Python) https://github.com/fanhuan/AAF kSNP v3 Reference-free SNP identification and estimation of phylogenetic trees using SNPs (based on&nb...2360 days ago
Ancestral sequence reconstruction steps !
...et.fasta > Dataset_Alig.fasta 2- Your dataset has a good phylogenetic signal, is possible to perfor...uivo.tre) These steps above, I call of pre-processing to inferences phylogenetic... 5- Perform phylog...2168 days ago
Frequent parameters for bioinformatics tools !
...SNPeff ann (SNP detection) -nodownload -no-intron -no-downstream -no SPLICE_SITE_REGION -upDownStreamLen 250 bcftools consensus (phylogenetic tree) --haplotype 1 ...1274 days ago
