Results for "pipeline"


  • TEannot

    We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".  

    460 days ago

  • Awesome bioinformatics pipelines !

    A curated list of awesome pipeline toolkits ...

    601 days ago

  • NCBI Prokaryotic Genome Annotation Pipeline

    NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and ar...ed an automatic prokaryotic genome annotation pipeline that combines ab initio&...NCBI Prokaryotic Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Artic...

    189 days ago

  • GARM:Genome Assembly, Reconciliation and Merging

    The pipeline is based mainly implemented using Perl scripts and modules and third-party o...the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages. The pipeline was tested on Debian, Ubuntu,...

    338 days ago

  • MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation

    MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembly and an...

    342 days ago

  • Unicycler: Hybrid assembly pipeline for bacterial genomes

    Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets whe...(PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemb...

    12 days ago

  • HybPiper

    ...ultaneously based on bait sequences. HybPiper pipeline starts with high-throughput s...s post-processing scripts, run after the main pipeline, to also extract the do not modify it after running the initial pipeline. It is a good idea to run the...

    383 days ago

  • Redundans

    Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input&nbs... resulting from genome assembly or scaffolding more details. The pipeline consists of three steps/modul...

    447 days ago

  • CLA: Contig-Layout-Authenticator

    ...nd sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted...users to cross-check before constructing the consensus draft. The CLA pipeline was designed and trained exte...

    201 days ago

  • DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication

    We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-line annotation s...

    7 days ago