Results for "pipeline"
Bookmarks
Next Generation Sequencing (NGS) Tutorials
...========================== NGS data analysis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline DOI: 10.1038/nbt.2134...34/abstract WEP: a high-performance analysis pipeline for whole-exome data htt...3471 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports...1203 days ago
- ...f aligned reads and generates a list of likely variants in VCF format Pipelines are for those who are comfor...branching and iteration logic. WGS/exome GATK-based variant calling pipeline This is a basic variant-ca...
3637 days ago
- ...is very important for further analysis or data mining. There are many pipeline for raw sequence quality anal...ty. https://code.google.com/p/biowiki/ https://code.google.com/p/ngs-pipeline/source/browse/#svn%2Ftrunk N...
3218 days ago
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genome...
2993 days ago
- flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is...
2991 days ago
- Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-b...
2976 days ago
Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline2941 days ago
REAPR: a universal tool for genome assembly evaluation
...a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorr...2934 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...r Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in four steps:...2898 days ago
