Results for "pipeline"
Blogs
Five points for bioinformatics software/tools
...n view all of the parts of the program and see the logical flow of the pipeline. In addition, open source mak...ource programs to deal with cutting-edge problems or to customize your pipeline. Apart from your computa...3697 days ago
List of bioinformatics workflow management tools !
...scripting language for working with big data pipelines in computer systems of diffe...pe – A small language for defining pipeline stages and linking them toget...that simplifies writing parallel and scalable pipelines in a portable manner. [ ...1132 days ago
Five key traits to seek out in potential bioinformatics candidates !!!
...ing of biological problems. The bioinformatics can discover biological patterns and stories in genomic and proteomics data. They can develop the pipeline needed to properly collect, s...3181 days ago
Structural variation: the hidden genomic treasure
...yping from depth of read mapping.2011a,2011b AGEa tools that implements an algorithm for optimal alignment of sequences with SVs.2011 BreakSeqa pipeline for annotation, classificatio...2692 days ago
String graph based genome assembly software and tools !
...sga Assembles large genomes from high coverage short read data. SGA is designed as a modular set of programs, which are used to form an assembly pipeline. SGA implements a set of asse...2318 days ago
List of cancer genomics research web resources !
...sources GDAC http://gdac.broadinstitute.org/ Data analysis; automatic pipelines; user-friendly reports SNP5...ih.gov/ Visualization; gene mutation and variation; automated analysis pipeline GDSC http://www.cancerrxgene...2310 days ago
Bioinformatics tools for telomere to telomere assembly !
...c variation (Tobias Marschall)● SQANTI3 – an automated pipeline for the classification of lon...transcripts that can assess the quality of data and the preprocessing pipeline (Rocío Amorín d...982 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...file as text or in a FastQ file with their attributes. FastQ is the most common read file format since this is what the Illumina sequencing pipeline creates. This will henceforth...1194 days ago
Ancient whole genome duplication (WGD) detection tools !
...les about the analysis process of WGD. I searched for the keyword "wgd pipeline" and found the following: GenoDup: https:// github.com/MaoYafei/GenoDup-Pipelinehttps://peerj.com/articles/630...1145 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake &ldquo...924 days ago
