Results for "pipeline"
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...ultaneously based on bait sequences. HybPiper pipeline starts with high-throughput s...s post-processing scripts, run after the main pipeline, to also extract the intronic...so do not modify it after running the initial pipeline. It is a good idea to run the...2727 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembly and an...2686 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party o...the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages. The pipeline was tested on Debian, Ubuntu,...2682 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTURE for population inference. A GUI is available for interpretation. Do...2626 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...ds.----- PBJelly -----Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768PBJelly is a highly automated pipeline that aligns long sequencing r...2612 days ago
- A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome. DIAL works even when the depth of...
2610 days ago
SeqMule: Automated human exome/genome variants detection
...BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters b...2604 days ago
CLA: Contig-Layout-Authenticator
...nd sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted...users to cross-check before constructing the consensus draft. The CLA pipeline was designed and trained exte...2545 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and ar...ed an automatic prokaryotic genome annotation pipeline that combines ab initio&...NCBI Prokaryotic Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Artic...2534 days ago
- ...dataMate-pair information can be valuable in augmenting short-read assemblies and reconstructing the genome as larger scaffolds. AMOS-Hybrid is a pipeline written in the AMOS framework...
2530 days ago
